Tal vez las sql_notes variable te ayuda con este problema. Cita de la página de manual:
mysql> SET sql_notes = 1;
mysql> DROP TABLE IF EXISTS test.no_such_table;
Query OK, 0 rows affected, 1 warning (0.00 sec)
mysql> SHOW WARNINGS;
+-------+------+------------------------------------+
| Level | Code | Message |
+-------+------+------------------------------------+
| Note | 1051 | Unknown table 'test.no_such_table' |
+-------+------+------------------------------------+
1 row in set (0.00 sec)
mysql> SET sql_notes = 0;
mysql> DROP TABLE IF EXISTS test.no_such_table;
Query OK, 0 rows affected (0.00 sec)
mysql> SHOW WARNINGS;
Empty set (0.00 sec)