Esto quita la coma extra
SELECT
CUSTOMER_ID,
SUBSTRING(
CASE WHEN OPERDAYSJUL > 0 THEN ', Jul' ELSE '' END +
CASE WHEN OPERDAYSAUG > 0 THEN ', Aug' ELSE '' END +
...
CASE WHEN OPERDAYSJUN > 0 THEN ', Jun' ELSE '' END,
3, 255)
FROM TheTable